PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011947-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 288aa    MW: 31994.3 Da    PI: 9.7944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011947-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-164288455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  NNU_011947-RA 42 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 88
                   6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-2136104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.1463887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-174192No hitNo description
PfamPF000105.1E-144288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-214297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-184493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRDRPSFQVG FCCKKDVEYE IMDKKKEIRG STAARKGRAA EVHNLSERRR RDRINEKMKA  60
LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMFPGVQQ YMPTIGMGMG  120
MGMGMDMGIG MGMGMSRPVL PFHSILAGSG MPTPTAAAHL GPKLPMPAFH LPPVPTVGPS  180
RGQATNQSDP ASNSIGMQNP SQMLFPNFPD PYQHYFGLHQ MQSQATIEPN TSKGIETPEN  240
HQSVKQKRNV MGKKKDRGGT TNLLVEMLSR LIRETLCLPN FVDNVPEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264023.11e-132PREDICTED: transcription factor PIF1-like isoform X2
SwissprotQ8GZM73e-47PIF1_ARATH; Transcription factor PIF1
TrEMBLW9SDJ97e-95W9SDJ9_9R
STRINGSolyc09g063010.2.12e-77(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-37phytochrome interacting factor 3-like 5